PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18657.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 908aa    MW: 100423 Da    PI: 7.3213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18657.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.9e-20336436199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  +++lv++
  KHN18657.1 336 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLCAGDTVTFSRID-PGGKLVMG 432
                 99**************************666778999***************9989999999***9.********************887.78888888 PP

                 EE-S CS
          B3  96 vfrk 99 
                 ++++
  KHN18657.1 433 FRKA 436
                 7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-30332443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-20334436IPR015300DNA-binding pseudobarrel domain
CDDcd100175.97E-23334435No hitNo description
PROSITE profilePS5086310.532336437IPR003340B3 DNA binding domain
PfamPF023621.6E-16336435IPR003340B3 DNA binding domain
SMARTSM010197.5E-23336437IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181597647IPR011124Zinc finger, CW-type
PfamPF074962.3E-9602644IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPLSA YENSVFCNKF  60
HCQQTGWREC NFCNKPIHCG CIVSRSLFEY LDFGGIGCVS CVNTTQLSMM RNMENPNVTV  120
LSIKNNAGDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSRWNHAQRD GIIAHRGQKN  180
QEAKSSFREV EIGFSNVMNP SVQSLTFATL ENNRSTWEIK NMHESNTKPS LSMYLGNASG  240
NNSVPPSAGE AVEGRLDGKT SPPFQGSRSI FPKPLKNGLT MNMETNKGTM SQSRVARPPA  300
DGRGKNQLLP RYWPRITDEE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA  360
YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF  420
SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNLAKGTVSS GTENLPSGSN NADLLHSLTG  480
NVECHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI  540
DNEDAMELKL TWEEAQDLLR PPPSVKPSIV TIEDQVIEEY DEPPVFGKRT IFSACSSGGK  600
EQWAQCDDCS KWRKLPVDAL LPPKWTCCEN VWDSSRCSCS APEELSSREI ENLLKNNKDF  660
KKRRIVESSK SIQEHEPSGL DALASAAVLG ENLIDTAESS AGVTTKHPRH RPGCSCIVCI  720
QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADAAQKDQTL PKDELDTNGA  780
SRDDTSQLEK EAGLKSQHEV GGSSAGQIDL NSHPNREDMQ VETTGLNMSS HLEPATNHTV  840
GEFMNQNGLR NFNNEVQTGQ NSSLHTPKSN GEGQRYFSDG RCFASIMWNQ ERKDEVHSQT  900
NQSQNNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1333543913120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1741752KRRFKTLMLRKK
2741754KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602061.20.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X2
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLA0A0B2QFV30.0A0A0B2QFV3_GLYSO; B3 domain-containing transcription repressor VAL1
STRINGGLYMA18G05840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]